Please see below for recent publications from members of our department.
2023
May
| Abraham J. Qavi, Caroline E. Franks, Gary Grajales-Reyes, Jeanne Anderson, Lori Ashby, Kimberly Zohner, Ann M. Gronowski, Christopher W. Farnsworth. Increased specimen minimum volume reduces turnaround time and hemolysis. Clinical Biochemistry, Volume 115, 2023, Pages 137-143, ISSN 0009-9120. https://doi.org/10.1016/j.clinbiochem.2022.03.008 |
| Andrea Francesca M. Salvador, Taitea Dykstra, Justin Rustenhoven, Wenqing Gao, Susan M. Blackburn, Kesshni Bhasiin, Michael Q. Dong, Rafaela Mano Guimarães, Sriharsha Gonuguntla, Igor Smirnov, Jonathan Kipnis, Jasmin Herz. Age-dependent immune and lymphatic responses after spinal cord injury. Neuron, Volume 111, Issue 14, 2023, Pages 2155-2169.e9, ISSN 0896-6273. https://doi.org/10.1016/j.neuron.2023.04.011 |
| David Y. Chen, Leslie A. Sutton, Sai Mukund Ramakrishnan, Eric J. Duncavage, Sharon E. Heath, Leigh A. Compton, Christopher A. Miller and Timothy J. Ley. Melanoma in a patient with DNMT3A overgrowth syndrome. Cold Spring Harbor Molecular Case Studies. https://doi.org/10.1101/mcs.a006267. |
| Bahareh A. Mojarad, Patricia V. Hernandez, Michael J. Evenson, Meagan M. Corliss, Sarah L. Stein, Amy Theos, Carrie C. Coughlin, Bryan Sisk, Maithilee Menezes, Molly C. Schroeder, Jonathan W. Heusel, Julie A. Neidich, Yang Cao. Profiling PIK3CA variants in disorders of somatic mosaicism. Genetics in Medicine Open, Volume 1, Issue 1, 2023, 100815, ISSN 2949-7744. https://doi.org/10.1016/j.gimo.2023.100815. |
| Mishra N, Kant R, Leung DW, Gross ML, Amarasinghe GK. Biochemical and HDX Mass Spectral Characterization of the SARS-CoV-2 Nsp1 Protein. Biochemistry, 2023 Jun 6;62(11):1744-1754. doi: 10.1021/acs.biochem.3c00035. Epub 2023 May 19. PMID: 37205707; PMCID: PMC10228561. |
| Robert F Potter and others, Evaluation of Variability in Interpretation of Disk Diffusion Testing for Cefiderocol Using Different Brands of Mueller–Hinton Agar. The Journal of Applied Laboratory Medicine, Volume 8, Issue 3, May 2023, Pages 523–534. https://doi.org/10.1093/jalm/jfac131. |
| Xiuting Liu, Graham D. Hogg, Chong Zuo, Nicholas C. Borcherding, John M. Baer, Varintra E. Lander, Liang-I Kang, Brett L. Knolhoff, Faiz Ahmad, Robin E. Osterhout, Anna V. Galkin, Jean-Marie Bruey, Laura L. Carter, Cedric Mpoy, Kiran R. Vij, Ryan C. Fields, Julie K. Schwarz, Haeseong Park, Vineet Gupta, David G. DeNardo. Context-dependent activation of STING-interferon signaling by CD11b agonists enhances anti-tumor immunity. Cancer Cell, Volume 41, Issue 6, 2023, Pages 1073-1090.e12, ISSN 1535-6108. https://doi.org/10.1016/j.ccell.2023.04.018. |
| C. Alston James, John M. Baer, Chong Zou, Usman Y. Panni, Brett L. Knolhoff, Graham D. Hogg, Natalie L. Kingston, Liang-I. Kang, Varintra E. Lander, Jingqin Luo, Yu Tao, Mark A. Watson, Rebecca Aft, Ryan C. Fields, William G. Hawkins, David G. DeNardo. Systemic Alterations in Type-2 Conventional Dendritic Cells Lead to Impaired Tumor Immunity in Pancreatic Cancer. Cancer Immunology Research, 2023. https://doi.org/10.1158/2326-6066.CIR-21-0946 |
| Yang, Y., Yuan, J., Field, R.L. et al. Induction of a torpor-like hypothermic and hypometabolic state in rodents by ultrasound. Nature Metabolism 5, 789–803 (2023). https://doi.org/10.1038/s42255-023-00804-z |
June
| Brett H. Herzog, et al. Tumor-associated fibrosis impairs immune surveillance and response to immune checkpoint blockade in non–small cell lung cancer. Science Translational Medicine, 15,eadh8005(2023). 10.1126/scitranslmed.adh8005 |
| Brittany A. Townley, Luke Buerer, Ning Tsao, Albino Bacolla, Fadhel Mansoori, Timur Rusanov, Nathanial Clark, Negar Goodarzi, Nicolas Schmidt, Sridhar Nonavinkere Srivatsan, Hua Sun, Reilly A. Sample, Joshua R. Brickner, Drew McDonald, Miaw-Sheue Tsai, Matthew J. Walter, David F. Wozniak, Alex S. Holehouse, Vladimir Pena, John A. Tainer, William G. Fairbrother, Nima Mosammaparast. A functional link between lariat debranching enzyme and the intron-binding complex is defective in non-photosensitive trichothiodystrophy. Molecular Cell, Volume 83, Issue 13, 2023, Pages 2258-2275.e11, ISSN 1097-2765. https://doi.org/10.1016/j.molcel.2023.06.011 |
| Vahid Azimi, Mark A Fiala, Mark A Zaydman. Use of the Current Standard of Practice Serum Free Light Chains (sFLC) Reference Interval Puts Black Patients at 5 Times Higher Odds for Light Chain Monoclonal Gammopathy of Undetermined Significance (LC-MGUS). Clinical Chemistry, Volume 69, Issue 9, September 2023, Pages 1084–1086. https://doi.org/10.1093/clinchem/hvad083 |
July
| Kenneth M. Murphy. “Doubt No More”: Two Sizes Fit All. The Journal of Immunology, July 1, 2023. Article |
| Catherine L Omosule and others. Method Comparison and Workflow Differences Using the Same Free Light Chain Assay on 2 Analyzer Platforms. The Journal of Applied Laboratory Medicine, Volume 8, Issue 4, July 2023, Pages 689–699. https://doi.org/10.1093/jalm/jfad020. |
| Feiya Ou, Stephen T. Ferris, Sunkyung Kim, Renee Wu, David A. Anderson III, Tian-Tian Liu, Suin Jo, Michael Y. Chen, William E. Gillanders, Theresa L. Murphy, Kenneth M. Murphy. Enhanced in vitro type 1 conventional dendritic cell generation via the recruitment of hematopoietic stem cells and early progenitors by Kit ligand. European Journal of Immunology, July 9, 2023. https://doi.org/10.1002/eji.202250201. |
| Madeline M. Schwarz, et al. Lrp1 is essential for lethal Rift Valley fever hepatic disease in mice. Science Advances 9,eadh2264(2023). 10.1126/sciadv.adh2264 |
| Andrea Francesca M. Salvador, Taitea Dykstra, Justin Rustenhoven, Wenqing Gao, Susan M. Blackburn, Kesshni Bhasiin, Michael Q. Dong, Rafaela Mano Guimarães, Sriharsha Gonuguntla, Igor Smirnov, Jonathan Kipnis, Jasmin Herz. Age-dependent immune and lymphatic responses after spinal cord injury. Neuron, Volume 111, Issue 14, 2023, Pages 2155-2169.e9, ISSN 0896-6273. https://doi.org/10.1016/j.neuron.2023.04.011 |
| Chin Re-I, et. al. Circumferential Resection Margin as Predictor of Nonclinical Complete Response in Nonoperative Management of Rectal Cancer. Diseases of the Colon & Rectum, 66(7):p 973-982, July 2023. https://doi.org/10.1097/DCR.0000000000002654 |
August
| C. Alston James, John M. Baer, Chong Zou, Usman Y. Panni, Brett L. Knolhoff, Graham D. Hogg, Natalie L. Kingston, Liang-I. Kang, Varintra E. Lander, Jingqin Luo, Yu Tao, Mark A. Watson, Rebecca Aft, Ryan C. Fields, William G. Hawkins, David G. DeNardo; Systemic Alterations in Type-2 Conventional Dendritic Cells Lead to Impaired Tumor Immunity in Pancreatic Cancer. Cancer Immunol Res, 1 August 2023; 11 (8): 1055–1067. https://doi.org/10.1158/2326-6066.CIR-21-0946 |
| Parith Wongkittichote, Sanmati R. Cuddapah, Stephen R. Master, Dorothy K. Grange, Dennis Dietzen, Stephen M. Roper, Rebecca D. Ganetzky. Biochemical characterization of patients with dihydrolipoamide dehydrogenase deficiency. JMD Reports, 4 August 2023. https://doi.org/10.1002/jmd2.12382 |
| Baer, J.M., Zuo, C., Kang, LI. et al. Fibrosis induced by resident macrophages has divergent roles in pancreas inflammatory injury and PDAC. Nat Immunol, 2023. https://doi.org/10.1038/s41590-023-01579-x |
| Zita Hubler, MD, PhD; Catherine Gooch, MD, Erin Hediger, CGC; Yang Cao, PhD. AMP case report: Small intragenic structural variants in SATB2-associated syndrome. CAP TODAY, August 2023. Article |
| Terada Y, Li W, Shepherd HM, Takahashi T, Yokoyama Y, Bery AI, Mineura K, Bai YZ, Ritter JH, Hachem RR, Bharat A, Lavine KJ, Nava RG, Puri V, Krupnick AS, Gelman AE, Reed HO, Wong BW, Kreisel D. Smoking exposure-induced bronchus-associated lymphoid tissue in donor lungs does not prevent tolerance induction after transplantation. Am J Transplant, 2023 Aug 22:S1600-6135(23)00648-2. doi: 10.1016/j.ajt.2023.08.010. Epub ahead of print. PMID: 37619922. |
September
| Do-Hyun Kim, et al. A type 2 immune circuit in the stomach controls mammalian adaptation to dietary chitin. Science 381,1092-1098(2023). DOI:10.1126/science.add5649 |
| Nicholas C Spies, Zita Hubler, Stephen M Roper, Catherine L Omosule, Michael Senter-Zapata, Brittany L Roemmich, Hannah Marie Brown, Ryan Gimple, Christopher W Farnsworth. GPT-4 Underperforms Experts in Detecting IV Fluid Contamination. The Journal of Applied Laboratory Medicine, 2023; jfad058. https://doi.org/10.1093/jalm/jfad058 |
| Ning Tsao, Mohamed E. Ashour, Nima Mosammaparast. How RNA impacts DNA repair. DNA Repair, Volume 131, 2023, 103564, ISSN 1568-7864. https://doi.org/10.1016/j.dnarep.2023.103564 |
| Salvatore E. Mignano, Samih H. Nasr, Mary E. Fidler, Loren P. Herrera Hernandez, Mariam P. Alexander, Sanjeev Sethi, Nidia Messias, Tarek Alhamad, Louai Alrata, Sam T. Albadri, Lynn D. Cornell. Recurrent atypical anti-glomerular basement membrane nephritis in the kidney transplant. American Journal of Transplantation, 2023, ISSN 1600-6135. https://doi.org/10.1016/j.ajt.2023.09.007 |
October
| Sunkyung Kim, Jing Chen, Suin Jo, Feiya Ou, Stephen T. Ferris, Tian-Tian Liu, Ray A. Ohara, David A. Anderson, Renee Wu, Michael Y. Chen, William E. Gillanders, William E. Gillanders, Theresa L. Murphy, Kenneth M. Murphy. IL-6 selectively suppresses cDC1 specification via C/EBPβ. Journal of Experimental Medicine, 2 October 2023; 220 (10): e20221757. https://doi.org/10.1084/jem.20221757 |
| Christopher Snyder, Mark A Zaydman, Thomas Chong, Jason Baron, Jonathan H Chen, Brian Jackson, Generative Artificial Intelligence: More of the Same or Off the Control Chart?, Clinical Chemistry, Volume 69, Issue 10, October 2023, Pages 1101–1106, https://doi.org/10.1093/clinchem/hvad129 |
| Schwartz DJ, et. al. Effect of amoxicillin on the gut microbiome of children with severe acute malnutrition in Madarounfa, Niger: a retrospective metagenomic analysis of a placebo-controlled trial. The Lancet Microbe. October 19, 2023. https://doi.org/10.1016/S2666-5247(23)00213-6 |
November
| Balasubramanian I, Bandyopadhyay S, Flores J, Lin X, Liu H, Sun S, Golovchenko NB. Liu Y, Patel R, Bianchi-Smak J, Joseph I, Suntornsaratoon P, Vargas J, Green PHR, Bhagt G, Ferraris R, Lagana SM, Ying W, Zhang Y, Wang Z, Li WV, Singh S, Zhou Z, Kollias G, Yu S, Wei Z, Bonder EM, Zhang L, Edelblum KL, Liu TC*, Gao N*. Stress activated Paneth cell subset propagates inflammation. The EMBO Journal, 2023 Nov 2;42(21):e113975. |
| Intelly S Lee, Steven J Van Dyken. Both Horatio and Polonius: Innate Lymphoid Cells in Tissue Homeostasis and Repair. Immunohorizons. 2023 Nov 1;7(11):729-736. doi: 10.4049/immunohorizons.2300053 |
| Irina Shchukina, Pavla Bohacova, Maxim N. Artyomov. T cell control of inflammaging. Seminars in Immunology, Volume 70, 2023, 101818, ISSN 1044-5323. https://doi.org/10.1016/j.smim.2023.101818 |
| Zita M L Hubler, Christopher W Farnsworth, Nicholas C Spies, Asymptomatic Hyponatremia and Hyperkalemia in a Patient with Leukemic Leukocytosis. Clinical Chemistry, Volume 69, Issue 11, November 2023, Pages 1322–1323. https://doi.org/10.1093/clinchem/hvad105 |
| Melissa E. Cook, Irina Shchukina, Chih-Chung Lin, Tara R. Bradstreet, Elizabeth A. Schwarzkopf, Nicholas N. Jarjour, Ashlee M. Webber, Konstantin Zaitsev, Maxim N. Artyomov, Brian T. Edelson. BHLHE40 Mediates Cross-Talk between Pathogenic TH17 Cells and Myeloid Cells during Experimental Autoimmune Encephalomyelitis. Immunohorizons, 1 November 2023; 7 (11): 737–746. https://doi.org/10.4049/immunohorizons.2300042 |
| Borcherding, N., Brestoff, J.R. The power and potential of mitochondria transfer. Nature, 623, 283–291 (2023). https://doi.org/10.1038/s41586-023-06537-z |
| Marina Terekhova, Amanda Swain, Pavla Bohacova, Ekaterina Aladyeva, Laura Arthur, Anwesha Laha, Denis A. Mogilenko, Samantha Burdess, Vladimir Sukhov, Denis Kleverov, Barbora Echalar, Petr Tsurinov, Roman Chernyatchik, Kamila Husarcikova, Maxim N. Artyomov. Single-cell atlas of healthy human blood unveils age-related loss of NKG2C+GZMB−CD8+ memory T cells and accumulation of type 2 memory T cells. Immunity, 2023, ISSN 1074-7613. https://doi.org/10.1016/j.immuni.2023.10.013 |
| Yang F, Suo M, Weli H, Wong M, Junidi A, Cummings C, Johnson R, Mallory K, Liu AY, Greenberg ZJ, Schuettpelz LG, Miller MJ, Luke CJ, Randolph GJ, Zinselmeyer BH, Wardenburg JB, Clemens RA. Staphylococcus aureus α-toxin impairs early neutrophil localization via electrogenic disruption of store-operated calcium entry. Cell Reports, 2023 Nov 9;42(11):113394. doi: 10.1016/j.celrep.2023.113394 |
| He M, He B, Weng J, Cheng JQ, Gu H. Manual and Semi-Automated Measurement and Calculation of Osteosarcoma Treatment Effect Using Whole Slide Image and Qupath. Pediatric and Developmental Pathology. 2023 Nov 9:10935266231207937. doi: 10.1177/10935266231207937 |
| Gomez F, Fisk B, McMichael JF, Mosior M, Foltz JA, Skidmore ZL, Duncavage EJ, Miller CA, Abel H, Li YS, Russler-Germain DA, Krysiak K, Watkins MP, Ramirez CA, Schmidt A, Martins Rodrigues F, Trani L, Khanna A, Wagner JA, Fulton RS, Fronick CC, O’Laughlin MD, Schappe T, Cashen AF, Mehta-Shah N, Kahl BS, Walker J, Bartlett NL, Griffith M, Fehniger TA, Griffith OL. Ultra-Deep Sequencing Reveals the Mutational Landscape of Classical Hodgkin Lymphoma. Cancer Res Commun, 2023 Nov 15;3(11):2312-2330. doi: 10.1158/2767-9764.CRC-23-0140 |
| Kim H, Abbasi A, Sharrock J, Santosa EK, Sheppard S, Lau CM, Edelson BT, Sun JC. Cutting Edge: STAT4 Promotes Bhlhe40 Induction to Drive Protective IFN-γ from NK Cells during Viral Infection. The Journal of Immunology, 2023 Nov 15;211(10):1469-1474. doi: 10.4049/jimmunol.2300402 |
| Lian V, Hinrichs H, Young M, Faerber A, Özler O, Xie Y, Ballentine SJ, Tarr PI, Davidson NO, Thompson MD. Maternal Obesogenic Diet Attenuates Microbiome Dependent Offspring Weaning Reaction with Worsening of Steatotic Liver Disease. The American Journal of Pathology. 2023 Nov 27:S0002-9440(23)00445-5. doi: 10.1016/j.ajpath.2023.11.006. Epub ahead of print. PMID: 38029921. |
December
| Alifiya Kapasi, Jennifer Poirier, Ahmad Hedayat, Ashley Scherlek, Srabani Mondal, Tiffany Wu, John Gibbons, Lisa L Barnes, David A Bennett, Sue E Leurgans, Julie A Schneider, High-throughput digital quantification of Alzheimer disease pathology and associated infrastructure in large autopsy studies. Journal of Neuropathology & Experimental Neurology, Volume 82, Issue 12, December 2023, Pages 976–986. https://doi.org/10.1093/jnen/nlad086 |
| Yomogida, K., Trsan, T., Sudan, R. et al. The transcription factor Aiolos restrains the activation of intestinal intraepithelial lymphocytes. Nature Immunology (2023). https://doi.org/10.1038/s41590-023-01693-w |