Publications

Please see below for recent publications from members of our department.

• Gastric oxyntic gland adenomas: A multi-institutional retrospective study of 27 patients with immunohistochemical and molecular characterization of 8 samples

  February 1, 2027

  Gastric oxyntic gland adenomas: A multi-institutional retrospective study of 27 patients with immunohistochemical and molecular characterization of 8 samples

  Wang, L., Halper-Stromberg, E., Stashek, K., Chen, T., Byrnes, K., Booth, A. L., Du, W., Voltaggio, L., Karamchandani, D. M. & Tondon, R., Feb 2027, In: Annals of Diagnostic Pathology. 86, 152713.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Oxaliplatin triggers adipose and muscle wasting through cancer-independent metabolic and CNS pathways in mouse models

  December 1, 2026

  Oxaliplatin triggers adipose and muscle wasting through cancer-independent metabolic and CNS pathways in mouse models

  Du, J., Mintz, R. L., Sudlow, L. C., Field, R. L., Stander, C., Brestoff, J. R., Randolph, G. J. & Berezin, M. Y., Dec 2026, In: Communications Biology. 9, 1, 1241.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Renal Pathology Society Survey of Global Renal Pathology Practice Variation in Preanalytic and Analytic Phases

  October 1, 2026

  Renal Pathology Society Survey of Global Renal Pathology Practice Variation in Preanalytic and Analytic Phases

  Gaut, J. P., Seshan, S. V., Adefidipe, A. A., Zhou, R., Akilesh, S., Gönül, İ. I., Gowrishankar, S., Henderson, J. M., Kalebi, A., Moura, L. A., Mubarak, M., Singh, G., Vorobyeva, O., Wiech, T., Zeng, C. & Roelofs, J. J. T. H., Oct 2026, In: Laboratory Investigation. 106, 10, 106159.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Sarcomas With EWSR1::NFATC2 and FUS::NFATC2 Gene Fusions Arising in Soft Tissue and Bone: A Clinicopathologic Study of 32 Cases Emphasizing Their Wide Morphologic and Clinical Spectrum

  October 1, 2026

  Sarcomas With EWSR1::NFATC2 and FUS::NFATC2 Gene Fusions Arising in Soft Tissue and Bone: A Clinicopathologic Study of 32 Cases Emphasizing Their Wide Morphologic and Clinical Spectrum

  Torres-Mora, J., Dehner, C. A., Warmke, L. M., Folpe, A. L., Chrisinger, J. S. A., Demicco, E. G., Dickson, B. C., Gross, J. M., Bishop, J. A., Gupta, S., Buehler, D., Kipp, B., Michal, M., Iding, J. S., Halling, K. C., Wenger, D. E., Pujari, G. P., Alvand, S. & Fritchie, K. J., Oct 2026, In: Modern Pathology. 39, 10, 101050.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Rare ophthalmic complication of tuberculosis meningitis: tuberculosis orbital apex syndrome

  September 22, 2026

  Rare ophthalmic complication of tuberculosis meningitis: tuberculosis orbital apex syndrome

  Wang, W. X., Reeves, M. G. R., Schwetye, K. E. & Montana, C. L., Sep 22 2026, In: BMJ Case Reports. 19, 9

  Research output: Contribution to journal › Article › peer-review

  Publication

• Evolution, Mechanisms, and Therapeutic Implications of Mobile Tetracycline Destructases

  September 1, 2026

  Evolution, Mechanisms, and Therapeutic Implications of Mobile Tetracycline Destructases

  Xue, Y. P., Li, R., Gillespie, V. J., Yang, Z., Tang, W. K., Tolia, N. H., Wencewicz, T. A. & Dantas, G., Sep 2026, In: BioEssays. 48, 9, e70183.

  Research output: Contribution to journal › Review article › peer-review

  Publication

• Transfusion medicine: The foundation for the future of blood and biotherapies

  September 1, 2026

  Transfusion medicine: The foundation for the future of blood and biotherapies

  Thibodeaux, S. R., Sep 2026, In: Transfusion. 66, S2, p. S5

  Research output: Contribution to journal › Editorial

  Publication

• A combinatorial construct library enables an expanded expression range of secreted therapeutic proteins by probiotic yeast

  January 1, 2026

  A combinatorial construct library enables an expanded expression range of secreted therapeutic proteins by probiotic yeast

  Wallace, M., Kratschmer, C., Brazil, B., Matiker, I., Evbuomwan, E. M., Prusa, J., Najari, J., Mehta, R., Romani, A., Zhang, S., Ning, J., Hagenson, R. A., Liao, J., Wang, B., Helmink, B. & Dantas, G., 2026, (Accepted/In press) In: Trends in Biotechnology.

  Research output: Contribution to journal › Article › peer-review

  Publication

• A cross-species single-cell kidney epigenome atlas reveals epithelial-dominant aging-like states in disease

  January 1, 2026

  A cross-species single-cell kidney epigenome atlas reveals epithelial-dominant aging-like states in disease

  Jeong, H., Lake, B. B., Diep, D., Li, X., Yan, Q., Gisch, D. L., Kaushal, M., Reinert, S., Eadon, M. T., Gaut, J. P., Jain, S. & Zhang, K., 2026, (Accepted/In press) In: Nature Aging.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Anal canal neoplasms in the modern era: integrating HPV biology, LAST terminology, and evolving molecular classification

  January 1, 2026

  Anal canal neoplasms in the modern era: integrating HPV biology, LAST terminology, and evolving molecular classification

  Byrnes, K. & Voltaggio, L., 2026, (Accepted/In press) In: Virchows Archiv.

  Research output: Contribution to journal › Review article › peer-review

  Publication

• A community effort to assess and improve drug sensitivity prediction algorithms

  December 1, 2014

  A community effort to assess and improve drug sensitivity prediction algorithms

  NCI-DREAM Community, Dec 1 2014, In: Nature Biotechnology. 32, 12, p. 1202-1212 11 p.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Transcriptional interference by antisense RNA is required for circadian clock function

  October 30, 2014

  Transcriptional interference by antisense RNA is required for circadian clock function

  Xue, Z., Ye, Q., Anson, S. R., Yang, J., Xiao, G., Kowbel, D., Glass, N. L., Crosthwaite, S. K. & Liu, Y., Oct 30 2014, In: Nature. 514, 7524, p. 650-653 4 p.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Autophagy is required for G₁/G₀quiescence in response to nitrogen starvation in Saccharomyces cerevisiae

  October 1, 2014

  Autophagy is required for G₁/G₀quiescence in response to nitrogen starvation in Saccharomyces cerevisiae

  An, Z., Tassa, A., Thomas, C., Zhong, R., Xiao, G., Fotedar, R., Tu, B. P., Klionsky, D. J. & Levine, B., Oct 1 2014, In: Autophagy. 10, 10, p. 1702-1711 10 p.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Bayesian hidden Markov models to identify RNA-protein interaction sites in PAR-CLIP

  June 1, 2014

  Bayesian hidden Markov models to identify RNA-protein interaction sites in PAR-CLIP

  Yun, J., Wang, T. & Xiao, G., Jun 2014, In: Biometrics. 70, 2, p. 430-440 11 p.

  Research output: Contribution to journal › Article › peer-review

  Publication

• DIGRE: Drug-Induced genomic residual effect model for successful prediction of multidrug effects

  June 1, 2014

  DIGRE: Drug-Induced genomic residual effect model for successful prediction of multidrug effects

  Yang, J., Tang, H., Li, Y., Zhong, R., Wang, T., Wong, S. T. C., Xiao, G. & Xie, Y., Jun 2014, In: CPT: Pharmacometrics and Systems Pharmacology. 3, 7, e200.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Detection of candidate tumor driver genes using a fully integrated Bayesian approach

  May 10, 2014

  Detection of candidate tumor driver genes using a fully integrated Bayesian approach

  Yang, J., Wang, X., Kim, M., Xie, Y. & Xiao, G., May 10 2014, In: Statistics in medicine. 33, 10, p. 1784-1800 17 p.

  Research output: Contribution to journal › Article › peer-review

  Publication

• The role of DAB2IP in androgen receptor activation during prostate cancer progression

  April 10, 2014

  The role of DAB2IP in androgen receptor activation during prostate cancer progression

  Wu, K., Liu, J., Tseng, S. F., Gore, C., Ning, Z., Sharifi, N., Fazli, L., Gleave, M., Kapur, P., Xiao, G., Sun, X., Oz, O. K., Min, W., Alexandrakis, G., Yang, C. R., Hsieh, C. L., Wu, H. C., He, D., Xie, D. & Hsieh, J. T., Apr 10 2014, In: Oncogene. 33, 15, p. 1954-1963 10 p.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Validation of a serum screen for alzheimer's disease across assay platforms, species, and tissues

  January 1, 2014

  Validation of a serum screen for alzheimer’s disease across assay platforms, species, and tissues

  O’Bryant, S. E., Xiao, G., Zhang, F., Edwards, M., German, D. C., Yin, X., Como, T., Reisch, J., Huebinger, R. M., Graff-Radford, N., Dickson, D., Barber, R., Hall, J., O’Suilleabhain, P. & Grammas, P., 2014, In: Journal of Alzheimer’s Disease. 42, 4, p. 1325-1335 11 p.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Adaptive prediction model in prospective molecular signature-based clinical studies

  January 1, 2014

  Adaptive prediction model in prospective molecular signature-based clinical studies

  Xiao, G., Ma, S., Minna, J. & Xie, Y., 2014, In: Clinical Cancer Research. 20, 3, p. 531-539 9 p.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Using functional signature ontology (FUSION) to identify mechanisms of action for Natural products

  October 15, 2013

  Using functional signature ontology (FUSION) to identify mechanisms of action for Natural products

  Potts, M. B., Kim, H. S., Fisher, K. W., Hu, Y., Carrasco, Y. P., Bulut, G. B., Ou, Y. H., Herrera-Herrera, M. L., Cubillos, F., Mendiratta, S., Xiao, G., Hofree, M., Ideker, T., Xie, Y., Huang, L. J. S., Lewis, R. E., MacMillan, J. B. & White, M. A., Oct 15 2013, In: Science signaling. 6, 297, ra90.

  Research output: Contribution to journal › Article › peer-review

  Publication