Publications

Please see below for recent publications from members of our department.

• Retraction notice to “Generation of a gene-corrected human isogenic iPSC line from an Alzheimer’s disease iPSC line carrying thePSEN1 H163Rmutation” [Stem Cell Res. 79 (2024) 103495]

  June 1, 2026

  Retraction notice to “Generation of a gene-corrected human isogenic iPSC line from an Alzheimer’s disease iPSC line carrying thePSEN1 H163Rmutation” [Stem Cell Res. 79 (2024) 103495]

  Dominantly Inherited Alzheimer Network DIAN, Jun 2026, In: Stem Cell Research. 93, 103956.

  Research output: Contribution to journal › Comment/debate

  Publication

• Inflammaging in aged tissues drives remodeling of the CD8+T cell compartment

  May 26, 2026

  Inflammaging in aged tissues drives remodeling of the CD8+T cell compartment

  Shchukina, I., Rodriguez-Hernandez, C. J., Ruiz, H. S., Kleverov, M., Mintz, R. L., Mineura, K., Gunawardana, S. C., Hsiung, S., Bhattarai, B., Vachova, V., Kossl, J., Mogilenko, D. A., Field, R. L., Nguyen, T. H., Alayo, Q. A., Huckstep, C. G., Vander Wielen, B., Brestoff, J. R., Stewart, S. A. & Piston, D. W. & 4 others, Egawa, T., Kreisel, D., Randolph, G. J. & Artyomov, M. N., May 26 2026, In: Cell Reports. 45, 5, 117303.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Therapeutic mitochondria transplants made more efficient with targeting tool

  May 7, 2026

  Therapeutic mitochondria transplants made more efficient with targeting tool

  Krysa, S. J. & Brestoff, J. R., May 7 2026, In: Nature. 653, 8113, p. 38-39 2 p.

  Research output: Contribution to journal › Comment/debate

  Publication

• Convolutional–transformer fusion of ultrasound and diffuse optical tomography for breast lesion classification

  May 1, 2026

  Convolutional–transformer fusion of ultrasound and diffuse optical tomography for breast lesion classification

  Xue, M., Bennett, D., Hagemann, I. S., Mannix, J., Wiele, K., Tang, A., Hossain, M. I., Poplack, S. & Zhu, Q., May 2026, In: Computerized Medical Imaging and Graphics. 131, 102769.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Dynamics of Spinal Fluid Immune Cell Alterations Following Cladribine Tablet Treatment in Multiple Sclerosis

  May 1, 2026

  Dynamics of Spinal Fluid Immune Cell Alterations Following Cladribine Tablet Treatment in Multiple Sclerosis

  Smirnov, R. A., Cantoni, C., Lee, K., Agnihotri, R. A., Axtell, R. C., Albright, A., Lancia, S., Paley, M. A., Hayward, B., Korich, J., Evans, E., Pardo, G., Obeidat, A. Z., Stuve, O., Bar-Or, A., Artyomov, M. N., Cross, A., Edelson, B. T. & Wu, G., May 1 2026, In: Neurology: Neuroimmunology and NeuroInflammation. 13, 3, p. e200565

  Research output: Contribution to journal › Article › peer-review

  Publication

• A Gut-Restricted Liver X Receptor Agonist Ameliorates Liver Injury in Experimental Short Bowel Syndrome

  May 1, 2026

  A Gut-Restricted Liver X Receptor Agonist Ameliorates Liver Injury in Experimental Short Bowel Syndrome

  Kim, A., Alligood, D. M., Maram, L., Phelps, H. M., Cameron, M., DeRousse, J. T., Han, J., Dunning, T. J., Mintz, R. L., Park, A., Lee, D. D., Davis, D. L., Huckstep, C. G., Field, R. L., Hegazy, L., Zinselmeyer, B. H., Brestoff, J. R., Martin, C. A., Warner, B. W. & Elgendy, B. & 1 others, Randolph, G. J., May 2026, In: Gastroenterology. 170, 5, p. 1017-1032 16 p.

  Research output: Contribution to journal › Article › peer-review

  Publication

• The Utility of CDX2 and CK20 Immunohistochemical Reactivity to Distinguish Adenocarcinomas of the Lung From Their Benign Mimics

  May 1, 2026

  The Utility of CDX2 and CK20 Immunohistochemical Reactivity to Distinguish Adenocarcinomas of the Lung From Their Benign Mimics

  Li, J., Sandhu, A., Smith, M., Larsen, B. T., Tazelaar, H. D., Bernadt, C. T., Ritter, J., Lin, C.-Y. & Wein, A. N., May 2026, In: Archives of Pathology and Laboratory Medicine. 150, 5, p. 360-364 5 p.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Graded BMP signals modulate yellow and red color in fishes, impacting adult pigment patterns and conspecific shoaling behavior

  April 20, 2026

  Graded BMP signals modulate yellow and red color in fishes, impacting adult pigment patterns and conspecific shoaling behavior

  Huang, D., de Mello, P. L. H., Liu, T., Liu, Y., Kapadia, E. H., Liang, Y., Lu, J., Corbo, J. C. & Parichy, D. M., Apr 20 2026, In: Current Biology. 36, 8, p. 2127-2136.e5

  Research output: Contribution to journal › Article › peer-review

  Publication

• A SWI/SNF-specific Ig-like domain, SWIFT, is a transcription factor binding platform

  April 2, 2026

  A SWI/SNF-specific Ig-like domain, SWIFT, is a transcription factor binding platform

  Jain, S. U., Williamson, K. E., Ying, A. W., Turner, A. M., Jiang, R. J., Raval, S., So, K., Allison, M. J., Sankar, A., Sáme Guerra, D. D., Lin, Y., Jiang, Z., Mashtalir, N., Rohrs, H. W., Lichti, C. F., Muir, T. W., Papanastasiou, M., Paulo, J. A., Gygi, S. P. & Gross, M. L. & 1 others, Kadoch, C., Apr 2 2026, In: Science. 392, 6793, eaeb3627.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Mitochondrial iNOS blocks itaconate production by interacting with IRG1

  April 1, 2026

  Mitochondrial iNOS blocks itaconate production by interacting with IRG1

  Paulenda, T. & Artyomov, M. N., Apr 2026, In: Nature Metabolism. 8, 4, p. 768-769 2 p.

  Research output: Contribution to journal › Comment/debate

  Publication

• Relationship Between Clostridioides difficile Stool Concentration, Nucleic Acid Amplification Test Results, and Environmental Contamination

  April 1, 2026

  Relationship Between Clostridioides difficile Stool Concentration, Nucleic Acid Amplification Test Results, and Environmental Contamination

  Lee, M. M., Reske, K. A., Hink, T., Fishbein, S. R. S., Newcomer, E. P., Cass, C., Olsen, M. A., Dantas, G., Burnham, C. A. D. & Dubberke, E. R., Apr 2026, In: Open Forum Infectious Diseases. 13, 4

  Research output: Contribution to journal › Article › peer-review

  Publication

• Neoadjuvant Endocrine Treatment plus Mammaglobin-A DNA Vaccine Induces Antitumor Immune Responses in the Primary Tumor and Peripheral Blood of Patients with Breast Cancer: Insights from a Phase Ib Clinical Trial

  April 1, 2026

  Neoadjuvant Endocrine Treatment plus Mammaglobin-A DNA Vaccine Induces Antitumor Immune Responses in the Primary Tumor and Peripheral Blood of Patients with Breast Cancer: Insights from a Phase Ib Clinical Trial

  Mishra, R., Ademuyiwa, F., Yang, Y., Herndon, J., Li, L., Street, C., Myers, N., Chen, I., Zhang, X., Hagemann, I. S., Gao, F., Miller, C. A., Sankpal, N. V., Guthridge, J. M., Carmody, M., Ma, C. X., Suresh, R., Fleming, T. P., Marlin, C. & Goedegebuure, S. P. & 1 others, Gillanders, W. E., Apr 1 2026, In: Cancer immunology research. 14, 4, p. 543-558 16 p.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Integration of plasma eMTBR-tau243 and p-tau217 in the diagnosis and stratification of Alzheimer's disease: a prospective cohort study

  April 1, 2026

  Integration of plasma eMTBR-tau243 and p-tau217 in the diagnosis and stratification of Alzheimer's disease: a prospective cohort study

  Mattsson-Carlgren, N., Palmqvist, S., Horie, K., Barthélemy, N., Salvadó, G., Binette, A. P., Tideman, P., Morris, J. C., Benzinger, T. L. S., Perrin, R. J., Janelidze, S., Collij, L. E., Ossenkoppele, R., Schindler, S. E., Stomrud, E., Bateman, R. J. & Hansson, O., Apr 2026, In: The Lancet Neurology. 25, 4, p. 357-367 11 p.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Skull bone marrow immunity in brain health and disease: mechanisms and models

  March 25, 2026

  Skull bone marrow immunity in brain health and disease: mechanisms and models

  Vinnell, L., Stevenson, T. J., Kipnis, J. & Rustenhoven, J., Mar 25 2026, In: Journal of immunology (Baltimore, Md. : 1950). 215, S3

  Research output: Contribution to journal › Review article › peer-review

  Publication

• Quantifying the fidelity of in vitro human cell culture systems using a biomedical foundation model

  March 24, 2026

  Quantifying the fidelity of in vitro human cell culture systems using a biomedical foundation model

  Fujii, S., Espenschied, S. T., Anand, V., Bettencourt-Silva, J., Han, Y., Ito, G., Koseki, A., Kosugi, A., Kozloski, J., Matsumoto, R., Meng, S., Mulligan, N., Musich, R. J., Newhall, K. P., Oshina, E., Sekiguchi, S., Wang, Y., Hu, J., Ciorba, M. & Sibley, L. D. & 2 others, Okamoto, R. & Stappenbeck, T. S., Mar 24 2026, In: Proceedings of the National Academy of Sciences of the United States of America. 123, 12, e2520482123.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Prognostic Significance of Isolated Tumor Cells and the Role of Immunohistochemistry in Nodal Evaluation in Breast Cancer: A SEER-Based Analysis and Reappraisal

  February 1, 2026

  Prognostic Significance of Isolated Tumor Cells and the Role of Immunohistochemistry in Nodal Evaluation in Breast Cancer: A SEER-Based Analysis and Reappraisal

  Taha, S. R. & Boulos, F., Feb 2026, In: JCO Precision Oncology. 10, e2500974.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Phase I De-escalated RT in Endometrial Cancer

  January 1, 2026

  Phase I De-escalated RT in Endometrial Cancer

  Schiff, J. P., Raju-Salicki, S., McKinnish, T. R., Adekunle, O., Stavroulaki, K., Hatscher, C., Sun, L., Huang, Y., Huecker, J., Lew, D., Thaker, P. H., McCourt, C. K., Massad, L. S., Kuroki, L. M., Hagemann, A. R., Powell, M., Khabele, D., Mutch, D., Badiyan, S. & Lin, A. & 3 others, Schwarz, J., Markovina, S. & Contreras, J., 2026, (Accepted/In press) In: International Journal of Radiation Oncology Biology Physics.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Richter-like transformation of CLL/SLL after a temporary hold of ibrutinib: A case report

  January 1, 2026

  Richter-like transformation of CLL/SLL after a temporary hold of ibrutinib: A case report

  Chiang, T. L., Frater, J. & Cashen, A., Jan 1 2026, In: Leukemia Research Reports. 25, 100578.

  Research output: Contribution to journal › Article › peer-review

  Publication

• An Update on the Activities of the International Society for Laboratory Hematology, 2026

  January 1, 2026

  An Update on the Activities of the International Society for Laboratory Hematology, 2026

  Frater, J. L. & George, T. I., 2026, (Accepted/In press) In: International Journal of Laboratory Hematology.

  Research output: Contribution to journal › Editorial

  Publication

• Author Correction: Circadian circuits control plasticity of group 3 innate lymphoid cells by sustaining epigenetic configuration of RORγt (Nature Immunology, (2025), 26, 9, (1527-1539), 10.1038/s41590-025-02240-5)

  January 1, 2026

  Author Correction: Circadian circuits control plasticity of group 3 innate lymphoid cells by sustaining epigenetic configuration of RORγt (Nature Immunology, (2025), 26, 9, (1527-1539), 10.1038/s41590-025-02240-5)

  Bhattarai, B., Antonova, A. U., Fachi, J. L., Hopkins, L. S., McCullen, M. V. D., Saini, A., Oliveira, S. D., Beatty, W. L., Musiek, E. S., Kuchroo, V. K., Lazar, M. A., Oltz, G. & Colonna, M., 2026, (Accepted/In press) In: Nature immunology.

  Research output: Contribution to journal › Comment/debate

  Publication