Publications

Please see below for recent publications from members of our department.

• Therapeutic reprogramming of tumour-associated macrophages in pancreatic cancer using a cytotoxic CCR2-targeted nanotheranostic

  December 1, 2026

  Therapeutic reprogramming of tumour-associated macrophages in pancreatic cancer using a cytotoxic CCR2-targeted nanotheranostic

  Somani, V. K., Zhang, X., Chen, T. H. P., Bulle, A., Bansod, S., Li, L., Geng, Y., Kang, L. I., Heo, G. S., Luehmann, H., Zhang, Y., Saeed, M. A., Lavine, K. J., DeNardo, D. G., Pachynski, R. K., Liu, Y. & Lim, K. H., Dec 2026, In: Molecular Cancer. 25, 1, 65.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Retraction notice to “Generation of a gene-corrected human isogenic iPSC line from an Alzheimer’s disease iPSC line carrying thePSEN1 H163Rmutation” [Stem Cell Res. 79 (2024) 103495]

  June 1, 2026

  Retraction notice to “Generation of a gene-corrected human isogenic iPSC line from an Alzheimer’s disease iPSC line carrying thePSEN1 H163Rmutation” [Stem Cell Res. 79 (2024) 103495]

  Dominantly Inherited Alzheimer Network DIAN, Jun 2026, In: Stem Cell Research. 93, 103956.

  Research output: Contribution to journal › Comment/debate

  Publication

• A Gut-Restricted Liver X Receptor Agonist Ameliorates Liver Injury in Experimental Short Bowel Syndrome

  May 1, 2026

  A Gut-Restricted Liver X Receptor Agonist Ameliorates Liver Injury in Experimental Short Bowel Syndrome

  Kim, A., Alligood, D. M., Maram, L., Phelps, H. M., Cameron, M., DeRousse, J. T., Han, J., Dunning, T. J., Mintz, R. L., Park, A., Lee, D. D., Davis, D. L., Huckstep, C. G., Field, R. L., Hegazy, L., Zinselmeyer, B. H., Brestoff, J. R., Martin, C. A., Warner, B. W. & Elgendy, B. & 1 others, Randolph, G. J., May 2026, In: Gastroenterology. 170, 5, p. 1017-1032 16 p.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Graded BMP signals modulate yellow and red color in fishes, impacting adult pigment patterns and conspecific shoaling behavior

  April 20, 2026

  Graded BMP signals modulate yellow and red color in fishes, impacting adult pigment patterns and conspecific shoaling behavior

  Huang, D., de Mello, P. L. H., Liu, T., Liu, Y., Kapadia, E. H., Liang, Y., Lu, J., Corbo, J. C. & Parichy, D. M., Apr 20 2026, In: Current Biology. 36, 8, p. 2127-2136.e5

  Research output: Contribution to journal › Article › peer-review

  Publication

• A SWI/SNF-specific Ig-like domain, SWIFT, is a transcription factor binding platform

  April 2, 2026

  A SWI/SNF-specific Ig-like domain, SWIFT, is a transcription factor binding platform

  Jain, S. U., Williamson, K. E., Ying, A. W., Turner, A. M., Jiang, R. J., Raval, S., So, K., Allison, M. J., Sankar, A., Sáme Guerra, D. D., Lin, Y., Jiang, Z., Mashtalir, N., Rohrs, H. W., Lichti, C. F., Muir, T. W., Papanastasiou, M., Paulo, J. A., Gygi, S. P. & Gross, M. L. & 1 others, Kadoch, C., Apr 2 2026, In: Science. 392, 6793, eaeb3627.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Neoadjuvant Endocrine Treatment plus Mammaglobin-A DNA Vaccine Induces Antitumor Immune Responses in the Primary Tumor and Peripheral Blood of Patients with Breast Cancer: Insights from a Phase Ib Clinical Trial

  April 1, 2026

  Neoadjuvant Endocrine Treatment plus Mammaglobin-A DNA Vaccine Induces Antitumor Immune Responses in the Primary Tumor and Peripheral Blood of Patients with Breast Cancer: Insights from a Phase Ib Clinical Trial

  Mishra, R., Ademuyiwa, F., Yang, Y., Herndon, J., Li, L., Street, C., Myers, N., Chen, I., Zhang, X., Hagemann, I. S., Gao, F., Miller, C. A., Sankpal, N. V., Guthridge, J. M., Carmody, M., Ma, C. X., Suresh, R., Fleming, T. P., Marlin, C. & Goedegebuure, S. P. & 1 others, Gillanders, W. E., Apr 1 2026, In: Cancer immunology research. 14, 4, p. 543-558 16 p.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Integration of plasma eMTBR-tau243 and p-tau217 in the diagnosis and stratification of Alzheimer's disease: a prospective cohort study

  April 1, 2026

  Integration of plasma eMTBR-tau243 and p-tau217 in the diagnosis and stratification of Alzheimer's disease: a prospective cohort study

  Mattsson-Carlgren, N., Palmqvist, S., Horie, K., Barthélemy, N., Salvadó, G., Binette, A. P., Tideman, P., Morris, J. C., Benzinger, T. L. S., Perrin, R. J., Janelidze, S., Collij, L. E., Ossenkoppele, R., Schindler, S. E., Stomrud, E., Bateman, R. J. & Hansson, O., Apr 2026, In: The Lancet Neurology. 25, 4, p. 357-367 11 p.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Relationship Between Clostridioides difficile Stool Concentration, Nucleic Acid Amplification Test Results, and Environmental Contamination

  April 1, 2026

  Relationship Between Clostridioides difficile Stool Concentration, Nucleic Acid Amplification Test Results, and Environmental Contamination

  Lee, M. M., Reske, K. A., Hink, T., Fishbein, S., Newcomer, E. P., Cass, C., Olsen, M., Dantas, G., Burnham, C. A. D. & Dubberke, E. R., Apr 2026, In: Open Forum Infectious Diseases. 13, 4

  Research output: Contribution to journal › Article › peer-review

  Publication

• Skull bone marrow immunity in brain health and disease: mechanisms and models

  March 25, 2026

  Skull bone marrow immunity in brain health and disease: mechanisms and models

  Vinnell, L., Stevenson, T. J., Kipnis, J. & Rustenhoven, J., Mar 25 2026, In: Journal of immunology (Baltimore, Md. : 1950). 215, S3

  Research output: Contribution to journal › Review article › peer-review

  Publication

• Quantifying the fidelity of in vitro human cell culture systems using a biomedical foundation model

  March 24, 2026

  Quantifying the fidelity of in vitro human cell culture systems using a biomedical foundation model

  Fujii, S., Espenschied, S. T., Anand, V., Bettencourt-Silva, J., Han, Y., Ito, G., Koseki, A., Kosugi, A., Kozloski, J., Matsumoto, R., Meng, S., Mulligan, N., Musich, R. J., Newhall, K. P., Oshina, E., Sekiguchi, S., Wang, Y., Hu, J., Ciorba, M. & Sibley, L. D. & 2 others, Okamoto, R. & Stappenbeck, T. S., Mar 24 2026, In: Proceedings of the National Academy of Sciences of the United States of America. 123, 12, e2520482123.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Prognostic Significance of Isolated Tumor Cells and the Role of Immunohistochemistry in Nodal Evaluation in Breast Cancer: A SEER-Based Analysis and Reappraisal

  February 1, 2026

  Prognostic Significance of Isolated Tumor Cells and the Role of Immunohistochemistry in Nodal Evaluation in Breast Cancer: A SEER-Based Analysis and Reappraisal

  Taha, S. R. & Boulos, F., Feb 2026, In: JCO Precision Oncology. 10, e2500974.

  Research output: Contribution to journal › Article › peer-review

  Publication

• mRNA vaccines engage unconventional pathways in CD8⁺ T cell priming

  January 1, 2026

  mRNA vaccines engage unconventional pathways in CD8⁺ T cell priming

  Jo, S., Li, L., Thakur, C., Telfer, K. A., Sultan, H., Ohara, R. A., He, M., Nam, G., Chen, J., Ou, F., Draghi, M., Valiante, N. M., Schreiber, R., Randolph, G., Saligrama, N., Murphy, T., Gillanders, W. E. & Murphy, K., 2026, (Accepted/In press) In: Nature.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Richter-like transformation of CLL/SLL after a temporary hold of ibrutinib: A case report

  January 1, 2026

  Richter-like transformation of CLL/SLL after a temporary hold of ibrutinib: A case report

  Chiang, T. L., Frater, J. & Cashen, A., Jan 1 2026, In: Leukemia Research Reports. 25, 100578.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Phase I De-escalated RT in Endometrial Cancer

  January 1, 2026

  Phase I De-escalated RT in Endometrial Cancer

  Schiff, J. P., Raju-Salicki, S., McKinnish, T. R., Adekunle, O., Stavroulaki, K., Hatscher, C., Sun, L., Huang, Y., Huecker, J., Lew, D., Thaker, P. H., McCourt, C. K., Massad, L. S., Kuroki, L. M., Hagemann, A. R., Powell, M., Khabele, D., Mutch, D., Badiyan, S. & Lin, A. & 3 others, Schwarz, J., Markovina, S. & Contreras, J., 2026, (Accepted/In press) In: International Journal of Radiation Oncology Biology Physics.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Exoproteome of calorie-restricted humans identifies complement deactivation as an immunometabolic checkpoint reducing inflammaging

  January 1, 2026

  Exoproteome of calorie-restricted humans identifies complement deactivation as an immunometabolic checkpoint reducing inflammaging

  Mishra, M., Kim, H. H., Youm, Y. H., Gonzalez-Hurtado, E., Zaitsev, K., Dlugos, T., Shchukina, I., Gliniak, C., Ravussin, E., Mohanty, S., Shaw, A. C., Scherer, P. E., Artyomov, M. N. & Dixit, V. D., 2026, (Accepted/In press) In: Nature Aging.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Mitochondrial iNOS blocks itaconate production by interacting with IRG1

  January 1, 2026

  Mitochondrial iNOS blocks itaconate production by interacting with IRG1

  Paulenda, T. & Artyomov, M. N., 2026, (Accepted/In press) In: Nature Metabolism.

  Research output: Contribution to journal › Comment/debate

  Publication

• Multiomic study of cutaneous T-cell lymphoma reveals single-cell clonal evolution in progression and therapy resistance

  January 1, 2026

  Multiomic study of cutaneous T-cell lymphoma reveals single-cell clonal evolution in progression and therapy resistance

  Dorando, H. K., Andrews, J. M., Khatavkar, O. U., Borcherding, N. C., Korshunova, Y., Hakeman, G., Panigassi, R., Vo, P., Tu, R. Y., Tran, D., Quinn, C. C., Schmidt, J. A., Aluri, J., Harmon, M. T., Watkins, M. P., Frank, A., Cooper, M. A., Musiek, A. C., Mehta-Shah, N. & Payton, J. E., 2026, (Accepted/In press) In: Blood.

  Research output: Contribution to journal › Article › peer-review

  Publication

• Author Correction: Circadian circuits control plasticity of group 3 innate lymphoid cells by sustaining epigenetic configuration of RORγt (Nature Immunology, (2025), 26, 9, (1527-1539), 10.1038/s41590-025-02240-5)

  January 1, 2026

  Author Correction: Circadian circuits control plasticity of group 3 innate lymphoid cells by sustaining epigenetic configuration of RORγt (Nature Immunology, (2025), 26, 9, (1527-1539), 10.1038/s41590-025-02240-5)

  Bhattarai, B., Antonova, A. U., Fachi, J. L., Hopkins, L. S., McCullen, M. V. D., Saini, A., Oliveira, S. D., Beatty, W. L., Musiek, E. S., Kuchroo, V. K., Lazar, M. A., Oltz, G. & Colonna, M., 2026, (Accepted/In press) In: Nature immunology.

  Research output: Contribution to journal › Comment/debate

  Publication

• Mucinous Carcinoma Peritonei (Pseudomyxoma Peritonei), Grade 2 Versus Grade 3

  January 1, 2025

  Mucinous Carcinoma Peritonei (Pseudomyxoma Peritonei), Grade 2 Versus Grade 3

  MA, C. & Pai, R. K., Jan 1 2025, Gastrointestinal Pathology and Liver Metastasis: A Case-Based Approach to Diagnosis. Elsevier, p. 292-294 3 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  Publication

• Intestinal transepithelial permeability of oxytocin into the blood is dependent on the receptor for advanced glycation end products in mice

  December 1, 2017

  Intestinal transepithelial permeability of oxytocin into the blood is dependent on the receptor for advanced glycation end products in mice

  Higashida, H., Furuhara, K., Yamauchi, A. M., Deguchi, K., Harashima, A., Munesue, S., Lopatina, O., Gerasimenko, M., Salmina, A. B., Zhang, J. S., Kodama, H., Kuroda, H., Tsuji, C., Suto, S., Yamamoto, H. & Yamamoto, Y., Dec 1 2017, In: Scientific reports. 7, 1, 7883.

  Research output: Contribution to journal › Article › peer-review

  Publication